Please go through the below explanation for details on table and plot interpretations

Table column interpretation:

MicroRNAs (miRNAs) are endogenous non-coding small RNAs that play essential regulatory roles in plant development and environmental stress responses.

Therefore, for all miRNA's, counts were calculated for three regions: one using the gene body,second inclusive of the upstream and downstream region, defined as a 1KB region directly upstream of the gene start site, and 1 KB region directly downstream of the gene end site, third covering larger base pair inclusive of the upstream and downstream region, defined as a 5KB region directly upstream of the gene start site, and 5 KB region directly downstream of the gene end site:

1. Within miRNA ( miRNA within the gene model)

2. 1kb miRNA ( miRNA within 1kb of the gene model)

3. 5kb miRNA ( miRNA within 5kb of the gene model)

4. Labels

The labels are the classes or the groups the genes are mapped into.The labels can act as both target variable or feature as per the need of the user for solving their specific problem

4.1 No Label

This selection is provided to enable users to view the properties of all genes without labeling them into different gene categories or annotations. This is to let users examine the features of multiple genes and identify common patterns among them. As it involves the inspection of all the genes therefore they work only for "Submit for analysis" button .

4.2 Classical Genes

Classical genes can be defined as the most well-studied genes mainly for their visible mutant phenotype (for example: liguleless3).

4.3 Pan-genome Genes

A gene in a given taxonomic group is either present in every individual (core), or absent in at least a single individual (dispensable).

4.4 Origin Genes

Gene duplication is an important evolutionary mechanism allowing new genetic material and thus opportunities to acquire new gene functions for an organism. There are different origins of duplications such as whole-genome duplications, tandems, etc.

Graph interpretations:

To the top right corner of the plots/graphs, there are options to download plot, zoom-out/zoom in, reset axes, autoscale, toggle spike lines, show closest data on hover, compare data on hover, box select, pan and lasso. Users can also select specific legends to view data only for the selected legends. Details on the interactive plot options are available here:
Interactive graph features

1. Histogram

The Histogram shows the frequency distribution of the selected insertion feature such as Within miRNA, 1kb miRNA and 5kb miRNA. The X-axis in the histogram represents the range of values present in the selected insertion. The Y-axis represents the frequency of values. In addition to the graph,to increase the interpretability of the data, We have also included P-values, mean and standard deviations of the selected datasets.

For further details on these features please go through the below tool :
https://jbrowse.maizegdb.org/